HP-SEE User Forum 2012, Belgrade

from Wednesday, 17 October 2012 (08:15) to Friday, 19 October 2012 (14:30)
National Library of Serbia

        : Sessions
    /     : Talks
        : Breaks
17 Oct 2012
18 Oct 2012
19 Oct 2012
AM
08:15
Registration and welcome coffee (until 09:00) ()
09:00
Welcome and opening -Dr Ognjen Prnjat (GRNET) (until 09:30) ()
09:30
Invited Session - Aleksandar Belic (Institute of Physics Belgrade) (until 11:00) ()
09:30 Regional eInfrastructure Development for South East Europe’s Research Communities - Ioannis Liabotis (GRNET)   ()
Slides
10:15 International HPC - Building bigger pyramide - Prof. Richard Kenway   ()
Slides
11:00 --- Coffee break ---
11:30
Life Science Session 1 -Dr Hrachya ASTSATRYAN (Head of HPC Laboratory, Institute for Informatics and Automation Problems of the National Academy of Sciences of Armenia) (until 13:00) ()
11:30 A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2 - Dr Anastasis Oulas (IMBG-HCMR)   ()
Slides
12:00 Quantum-Chemical Calculations for the Quantitative Estimations of the Processes in DNA - Mr George Mikuchadze (Programmer in Georgian Research and Educational Networking Association - GRENA)   ()
Slides
12:30 DNA muligene approach on HPC using RAxML software - Mr Luka Filipovic (University of Montenegro)   ()
Slides
09:00
Invited Session -Dr Mihnea Dulea (National Institute of Physics and Nuclear Engineering) (until 11:15) ()
09:00 LinkSCEEM2: Development of an HPC ecoSystem in the Eastern Mediterranean - Jens Wiegand (CASTORC)   ()
Slides
09:45 Numerical Study of Ultracold Quantum Gases: Formation of Faraday Patterns, Geometric Resonances, and Fragmentation - Dr Antun Balaz (Institute of Physics Belgrade)   ()
10:30 Monte Carlo methods for Electron Transport: Scalability Study using HP-SEE infrastructure - Prof. Aneta Karaivanova (IICT-BAS)   ()
Slides
11:15 --- Coffee break ---
11:45
Computational Physics Session 1 -Dr Emanouil Atanassov (Institute of Information and Communication Technologies, Bulgarian Academy of Sciences) (until 13:15) ()
11:45 Using Structured Adaptive Computational Grid for Solving Multidimensional Computational Physics Tasks - Dr Peter Bogatencov (RENAM Association)   ()
Slides
12:15 Computational approaches for electronic properties of semiconducting materials and nanostructures - Dr Nenad Vukmirovic (Scientific Computing Laboratory, Institute of Physics Belgrade, University of Belgrade)   ()
Slides
12:45 Reflections on Paralelization of Gravity Inversion - Prof. Neki Frasheri (Polytechnic University of Tirana, Faculty of Information Technology)   ()
Slides
09:00
Invited Session -Prof. Aneta Karaivanova (IICT-BAS) (until 10:30) ()
09:00 Use of High Performance Computing in (Bio)Chemistry - Prof. Ivan O. Juranić (Department of Chemistry-IChTM, University of Belgrade, Njegoševa 12, Belgrade, Serbia)   ()
Slides
09:45 The impact of GISELA Science Gateway (GSG) on the supported Latin America VRC's - Dr Jesus Cruz Guzman (Universidad Nacional Autonoma de Mexico UNAM)   ()
Slides
10:30
Computational Chemistry Session 1 -Prof. Aneta Karaivanova (IICT-BAS) (until 11:30) ()
10:30 Dynamics of uninhibited and covalently inhibited cysteine protease on non-physiological pH - Mr Branko J. Drakulić (Department of Chemistry-IChTM, University of Belgrade, Njegoševa 12, Belgrade, Serbia)   ()
Slides
11:00 Development of o Hybrid Statistical Physics – Quantum Mechanical Methodology for Computer Simulations of Condensed Phases and its Implementation on High-Performance Computing Systems - Prof. Ljupco Pejov (Institute of Chemistry, Faculty of Science, Skopje, Macedonia)   ()
Slides
11:30 --- Coffee break ---
PM
13:00 --- Lunch break ---
14:00
Life Science Session 2 -Dr Miklos Kozlovszky (OU) (until 15:00) ()
14:00 Parallellizing computational models of memory function for the investigation of sustained activity in the prefrontal cortex - Dr Anastasis Oulas   ()
Slides
14:30 Dynamical Features of Complex Systems: A Molecular Simulation Study - Dr Hrachya ASTSATRYAN (Head of HPC Laboratory, Institute for Informatics and Automation Problems of the National Academy of Sciences of Armenia)   ()
Slides
Visualisation
15:00
Scientific Computing, HPC Systems and Network Operation Session 1 - Ioannis Liabotis (GRNET) (until 16:00) ()
15:00 Advanced Vulnerability Assessment Tool for Distributed Systems - Dr Miklos Kozlovszky (OU)   ()
Slides
15:30 SCL Quantum Espresso Extensions - Dusan Stankovic (Scientific Computing Laboratory, Institute of Physics Belgrade)   ()
Slides
16:00 --- Coffee break ---
16:30
Scientific Computing, HPC Systems and Network Operation Session 2 - Anastas Mishev (University of Ss Cyril and Methodius, Faculty of Computer Science and Engineering) (until 19:00) ()
16:30 On HPC for Hyperspectral Image Processing - Dr Mihnea Dulea (National Institute of Physics and Nuclear Engineering)   ()
Slides
17:00 An Analysis of FFTW and FFTE Performance - Josip Jakic (Scientific Computing Laboratory, Institute of Physics Belgrade)   ()
Slides
17:30 Performance and scalability evaluation of short fragment sequence alignment applications - Mr Gergely Windisch (Obuda University - Hungary)   ()
Slides
18:00 Number Theory Algorithms on GPU Cluster - Dobromir Georgiev (Institute of Information and Communication Technologies, BAS)   ()
Slides
13:15 --- Lunch break ---
14:15
Computational Physics Session 2 -Dr Antun Balaz (Institute of Physics Belgrade) (until 15:45) ()
14:15 Numerical Simulations of the Structure and Transport Properties of the Complex Networks - Dr Igor Stankovic (Scientfic Computing Laboratory, Institute of Physics Belgrade, University of Belgrade)   ()
Slides
14:45 Emergence of resonant waves in cigar-shaped Bose-Einstein condensates - Dr Alexandru Nicolin (Horia Hulubei National Institute for Physics and Nuclear Engineering)   ()
Slides
15:15 Iterative Perturbative Method for a Study of Disordered Strongly Correlated Systems - Mr Jaksa Vucicevic (Institute of Physics Belgrade, Belgrade University, Pregrevica 118, 11080 Belgrade)   ()
Slides
15:45
Poster session (until 17:00) ()
15:45 Conformational Analysis of Kyotorphin Analogues Containing Unnatural Amino Acids - Nicolay Dodoff (Roumen Tsanev Institute of Molecular Biology, Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria)   ()
15:45 Data analisys in high energy phisics using CUDA and OpenCL - Mr Bogdan Alexandru Dumitru (Institute of Space Science) Mr Ciprian Mitu (Institute of Space Science)   ()
15:45 EagleEye: Feature Extraction from Satellite Images Using a Hybrid Computing Architecture - Mr Razvan Dobre (University Politehnica of Bucharest)   ()
15:45 Evolution of an gravitotional bound n-body system with DLA (Diffusion Limited Aggregation) initial mass distribution using GPU parralel computing - Mr Bogdan Alexandru Dumitru (Institute of Space Science) Mr Ciprian Mitu (Institute of Space Science)   ()
15:45 Formation of Faraday and Resonant Waves in Driven High-Density Bose-Einstein Condensates - Ms Mihaela Carina Raportaru (Horia Hulubei National Institute for Physics and Nuclear Engineering)   ()
15:45 Generalization of the parallel HPC implementation for solving differential equations - Dr Dragan Jakimovski (Institute of Physics, Faculty of Natural Sciences and Mathematics, Skopje, Macedonia)   ()
15:45 GPAW optimisations - Petar Jovanovic (Scientific Computing Laboratory, Institute of Physics Belgrade)   ()
15:45 Quenched Hadron Spectroscopy Using FermiQCD - Ms Rudina Zeqirllari (University of Tirana, Faculty of Natural Sciences, Department of Physics)   ()
15:45 Self-avoiding Hamiltonian Walks Counting in Parallel processing mode - Mr Sreten Lekic (Faculty of Natural Sciences University of Banja Luka)   ()
15:45 Some aspects of the comparative study of semi-empirical combustion models on FLUENT and OpenFOAM codes - Mr Sreten Lekic (Faculty of Natural Sciences University of Banja Luka)   ()
15:45 Using Parallel Computing to Calculate Quark-Antiquark Potential from Lattice QCD - Ms Dafina Xhako (Department of Engineering Science, Professional Studies Faculty "Alexander Moisiu" University, Durres, Albania,)   ()
17:00
Computational Physics Session 3 -Dr Alexandru Nicolin (Horia Hulubei National Institute for Physics and Nuclear Engineering) (until 18:00) ()
17:00 Determination of zone of flow instability in a gas flow past a square particle in a narrow microchannel - Dr Kiril Shterev (Institute of Mechanics - BAS)   ()
Slides
17:30 Electronic Structure and Lattice Dynamics Calculations of FeSb2 and CoSb2 - Mr Milos M. Radonjic (Scientific Computing Laboratory, Institute of Physics Belgrade, University of Belgrade)   ()
Slides
12:00
Computational Chemistry Session 2 -Dr Nenad Vukmirovic (Scientific Computing Laboratory, Institute of Physics Belgrade, University of Belgrade) (until 14:30) ()
12:00 Design of novel nano-photonic materials - Dr Manthos Papadopoulos (National Hellenic Research Foundation)   ()
Slides
12:30 Efficient Parallel Simulations of Large-Ring Cyclodextrins on HPC cluster - Dr Emanouil Atanassov (Institute of Information and Communication Technologies, Bulgarian Academy of Sciences)   ()
Slides
13:00 Free-energy surfaces of 2-[(carboxymethyl)sulfanyl]-4-oxo-4-arylbutanoic acids. Molecular dynamics study in explicit solvents. - Branko Drakulic (Department of Chemistry-IChTM, University of Belgrade)   ()
Slides
13:30 Investigations of biomolecular systems within the ISyMAB simulation framework - Mr Ionut Vasile (IFIN-HH)   ()
Slides
14:00 In the search of the HDAC-1 inhibitors. The preliminary results of ligand based virtual screening. - Mr Cvijetić Ilija N. (Innovation Center of the Faculty of Chemistry, University of Belgrade, Studentski Trg 12-16, Belgrade)   ()
Slides
14:30
Wrap up and conclusion (until 15:00) ()